rs33024401 SNP Detail

Summary

• ID
  rs33024401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46138914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCTAGCAA CTCAGATCGG CTGCGCACCA GCAAGCAGCA
  TGTCGCGGAG GCGGCACAGC TACGAGAACG ATGGTAAGTG CTCTCGGCCT GGCCACTGCG
  Y
  CCGGGTGAGA ACCGAGGCCG GGCTCGCCTT CAGTCTCCCG GGAACGGATA GGAATCCTTT
  CTCCCCGGGA GGGCTCGGGG AGCCCCAAAG GGAGGCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45727814	mCV22985030	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146261780	ENSMUSSNP5337514	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321104092	CHEV_4_46151786	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33024401					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46138914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	within coordinates
Ncbp1	nuclear cap binding protein subunit 1	within coordinates
Rr591548	regulatory region 591548	487 bp distal
Rr591549	regulatory region 591549	291 bp distal
Rr591550	regulatory region 591550	within coordinates
Rr591551	regulatory region 591551	189 bp distal
Tssr37109	transcription start site region 37109	393 bp downstream
Tssr37110	transcription start site region 37110	356 bp downstream
Tssr37111	transcription start site region 37111	320 bp downstream
Tssr37112	transcription start site region 37112	120 bp downstream
Tssr37113	transcription start site region 37113	82 bp downstream
Tssr41557	transcription start site region 41557	539 bp upstream
Tssr41558	transcription start site region 41558	450 bp upstream
Tssr41559	transcription start site region 41559	184 bp upstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	220 bp upstream