rs33024826 SNP Detail

Summary

• ID
  rs33024826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85390508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA ACAAAGAAAA GAAAAAAAGA
  M
  GTCGGTTCCA CTTTGCATCA CTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46225021	mCV24192288	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss322751239	CHEV_8_87187778	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33024826					SNP	C	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85390508 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	706 bp distal
Cpgi20703	CpG island 20703	156 bp proximal
Cpgi20704	CpG island 20704	968 bp proximal
Gm26664	predicted gene, 26664	211 bp upstream
Gm50464	predicted gene, 50464	1362 bp upstream
Ier2	immediate early response 2	1027 bp upstream
Rr368564	regulatory region 368564	1291 bp downstream
Rr368565	regulatory region 368565	20 bp upstream
Rr368566	regulatory region 368566	974 bp upstream
Rr401023	regulatory region 401023	822 bp downstream
Tssr2627	transcription start site region 2627	1219 bp upstream
Tssr78424	transcription start site region 78424	873 bp downstream
Tssr78425	transcription start site region 78425	332 bp upstream
Tssr78426	transcription start site region 78426	364 bp upstream
Tssr78427	transcription start site region 78427	659 bp upstream
Tssr82107	transcription start site region 82107	1020 bp upstream
Tssr82108	transcription start site region 82108	864 bp upstream
Tssr82109	transcription start site region 82109	808 bp upstream
Tssr82110	transcription start site region 82110	42 bp downstream