rs33024828 SNP Detail

Summary

• ID
  rs33024828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123828094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGTGTG TGTGTGTGAG
  AGAGAGACAG AGAAAATATA TATATATCAT GGATGAGCTC AGCATGTAGA GCTTGGTTCT
  CTTCTACCAT GTGGGTCCCA GGAATAAAAT GGCAGCAAGT ACCTTCAACC CTCTAAGCTG
  TCTTGCCAGC CCTTCCTTTT TAATTTTGAA AAGAGGGTTG GGCTGGAGAG ATGGTTCAGC
  R
  GTTAAGAGCA CGGACTGCTC TTCCAAAGGT CCTGAGTTCA ACTCCCAGCA ACTACATGGT
  GGCTCACAAC CATCGGTAAT GGAGTCTGAT GCCCTCTTCT GGTGTGTCTG AAGACAGCTA
  CAGTGTACTT ACATAAATAA AATAAATCTT AAAAAAAAAG GAGAAGAAAA AAAAGAAAAG
  AGGGTTTAAG TTGCTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46225023	mCV23468038	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss145824469	ENSMUSSNP5552384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss322854276	CHEV_8_125625255	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33024828					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123828094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	779 bp proximal
Rpl13	ribosomal protein L13	995 bp upstream
Rr382749	regulatory region 382749	340 bp downstream
Rr672353	regulatory region 672353	659 bp distal
Rr672354	regulatory region 672354	86 bp proximal
Rr672355	regulatory region 672355	505 bp proximal
Snord68	small nucleolar RNA, C/D box 68	1703 bp upstream
Tssr79911	transcription start site region 79911	989 bp upstream
Tssr79912	transcription start site region 79912	1004 bp upstream
Tssr79913	transcription start site region 79913	1076 bp upstream
Tssr83335	transcription start site region 83335	905 bp downstream