rs33024950 SNP Detail

Summary

• ID
  rs33024950
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTTTGCT TTTCGGGGTT GGCTTGGCTT GCTTCGCTTC
  TGCCTCCTGG AAAGTCGTTT TTTCCACTTG ACAGTGTTTA CCAAGTCTAT CCTAACCCCA
  K
  CAGCCCTGAT CCTTATCGTT AAGTTCACTC TACGTTTAAC TTCCTCCCTA AGCCTGTCAA
  AATCTCTTTT GAACATCAAA TCCAGTTTTT AAACGTCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46224369	mCV24921845	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					T		G
ss60592234	NES16320151	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G		G	G	T	T		T	G	T	T		G
ss149092958	ENSMUSSNP5040608	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss322575053	CHEV_8_35171753	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33024950					SNP	G	G	G	G	G	T	G	T	G	G	T	T	G	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592234	NES16320151	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	within coordinates
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	52 bp downstream
Tssr80889	transcription start site region 80889	910 bp upstream
Tssr80890	transcription start site region 80890	857 bp upstream
Tssr80891	transcription start site region 80891	211 bp upstream
Tssr80892	transcription start site region 80892	177 bp upstream
Tssr80893	transcription start site region 80893	93 bp downstream