rs33027653 SNP Detail

Summary

• ID
  rs33027653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126864007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCTACA GTGTACTTAC
  TTACATATAA TAAATAAATC TTTTTTAAAA AATCAGGAAA AGTGAAACTT CTGATATTCA
  ACTGAAAGTG GGGACCCCAG CTTCAGCCAT GTCCTCTCTT CTTCTACTCA TGCATCCTCC
  TATCATTAGA AAAATGCCAG GCTTTTTTTT TTTTTAATGG TTTAAGTGCA TTGTTTAGTT
  Y
  GACTACACTA TATTTTCTTC TGCAGTGCTA GGGACCTCCC TCACAATGCT AAGAAAGCAT
  TCTCCCAATG AGACACACCC CAAGGCCCGT TTCCATGGTT TAAGATGAAA CCAAAGCCCA
  GGTAAAATGT GAATAGCAAG AGATCACACA AAGGATTAGT AACAGCATTC AGGGCTGACA
  GGCATCTTGA TTCTCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45728126	mCV25168832	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147411854	ENSMUSSNP1709385	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321300343	CHEV_4_126647458	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs33027653					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126864007 () rs orientation: forward

Symbol	Name	Function Class
4933424C08Rik	RIKEN cDNA 4933424C08 gene	832 bp downstream
Cpgi14832	CpG island 14832	1804 bp distal
Gm68857	predicted gene, 68857	832 bp upstream
Rr398497	regulatory region 398497	1848 bp downstream
Rr599782	regulatory region 599782	1512 bp distal
Tssr39026	transcription start site region 39026	1778 bp downstream
Tssr43410	transcription start site region 43410	1978 bp upstream
Tssr43411	transcription start site region 43411	1361 bp upstream