rs33027845 SNP Detail

Summary

• ID
  rs33027845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95161519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTA GCAACTTGCT GTTCTATAGA
  R
  GAAAGCTGCG TTCTCTAAGA GTTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46225207	mCV24117617	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145631295	ENSMUSSNP6000708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322808033	CHEV_8_96958791	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33027845					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95161519 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	within coordinates
Cpgi20846	CpG island 20846	310 bp distal
Nlrc5	NLR family, CARD domain containing 5	within coordinates
Rr401062	regulatory region 401062	409 bp downstream
Rr667981	regulatory region 667981	705 bp distal
Rr667982	regulatory region 667982	490 bp distal
Rr667983	regulatory region 667983	191 bp distal
Tssr78863	transcription start site region 78863	537 bp downstream
Tssr78864	transcription start site region 78864	488 bp downstream
Tssr78865	transcription start site region 78865	147 bp downstream
Tssr82495	transcription start site region 82495	721 bp upstream
Tssr82496	transcription start site region 82496	594 bp upstream