rs33027863 SNP Detail

Summary

• ID
  rs33027863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131402870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGCTCA CCCACAATCT
  ATTTCCAGAG ATGGGTATCT ATGGGGATCA CACACACTGA TCACATCATA CAGATTGATG
  TTTGCTCAGA TTTCCAAGGA ACTAAAGCAA GACCGAGGTT TGTAACATCT ACAAAGGGTA
  AGAAAGAGTG AGAAGCCTGT TTAAGGGAAA ACACATTAGT ATCAAGAACC CCTCGGGCGC
  K
  CTCTCTCTCT CTCTAGTAAG AGAACAGGAA GTTGATAAAC TTCCACAGTT AGGTTGTGGG
  TCATCTAAGC TTTCCAGGTA AGGACCGCCC AGAGGGGAAG GGTCTAAAGT GAGGGAATCA
  CTCACCCAGA GGCAGGACGA AGAAAAAGGG GAACCAGCAC AGGACGAAGA CACCCACGAC
  GATGGCTAGG GTCTTGGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45227880	mCV22780890	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss147607879	ENSMUSSNP5166441	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33027863					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131402870 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	within coordinates
Cpgi12295	CpG island 12295	82 bp proximal
Gm14285	predicted gene 14285	826 bp upstream
Gm39938	predicted gene, 39938	1732 bp downstream
Rr55657	regulatory region 55657	within coordinates
Tssr20277	transcription start site region 20277	655 bp upstream
Tssr20278	transcription start site region 20278	688 bp upstream
Tssr26401	transcription start site region 26401	1538 bp downstream
Tssr26402	transcription start site region 26402	1565 bp downstream
Tssr26403	transcription start site region 26403	1805 bp downstream