rs33028013 SNP Detail

Summary

• ID
  rs33028013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41340503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCT TACATGTGCT AGGATGTTCA
  Y
  CTACATCACT AGAAGAGGGA TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46225509	mCV24416935	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		C
ss60601050	NES16305990	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C		C	C	C	C		T	C	T	T		T
ss144674404	ENSMUSSNP4212029	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss322633455	CHEV_8_41972820	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33028013					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601050	NES16305990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41340503 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	75 bp distal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76993	transcription start site region 76993	1823 bp downstream
Tssr76994	transcription start site region 76994	820 bp downstream
Tssr76995	transcription start site region 76995	386 bp upstream
Tssr76996	transcription start site region 76996	441 bp upstream
Tssr76997	transcription start site region 76997	550 bp upstream
Tssr76998	transcription start site region 76998	935 bp upstream
Tssr81068	transcription start site region 81068	362 bp upstream