rs33029005 SNP Detail

Summary

• ID
  rs33029005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189724071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCTCC ATTTTTACAT
  CCAGGAGTCC AGCCAGGGAA CAGCACCACC CACAGTGGAC AGGCTTTCCA CATCAGTTAA
  GTCTATTAAG ATAATCCCTC CCAGGCATGC CCAGAGCCTC ATCTTCCAGC TGATTCTGTA
  TTCTGTCAAT TGACAGTTAA CACTGCACAG GGGGGTGCTC TTAGGAAGGT GATTTCTGCC
  Y
  TCCTAAAAAC TGCATCTATC TGTGGGGCAG AAGTGGCTAG GGGAGGCATT GGGGACACTT
  AAGCCCCTTT CTCCACCCGG GGCCTTTCCT GAAGCCACTG GAATCATTCA GGTGACAACC
  CCAATATCCT TGCTGGTTCT CCCGGTCTCA TCGCAAATTC ACAGTCTGCA GAGACATCAT
  TTAATAGTGT TTGAAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss46763124	NES10652216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs33029005					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763124	NES10652216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189724071 () rs orientation: forward

Symbol	Name	Function Class
Gm69432	predicted gene, 69432	1586 bp upstream
Gm70453	predicted gene, 70453	1606 bp upstream
Rr425897	regulatory region 425897	1597 bp distal
Rr425898	regulatory region 425898	1439 bp distal