About   Help   FAQ
rs33029285 SNP Detail
Summary
  • ID
    rs33029285
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93351905 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGCAGTGGC AGCTCGAAAA
CGAGGCAGAC GCCCGTCAGA ACAAGGTCTA CTCTAGGCCT AGCAGGCAGG AGCAGAGGCT
TCGCCAGGAG CTGGGGGAGC GTCAGCTCCG GGAGCAGGAG GAGCAGCGCC GCGACCTCCA
ACAGGAGCGT CCCGCTGAGG AGGCGCGCCA GCGCAACCAG TGGGAGAGGC CGCAGCGGGC
R
GAGGAGCGCC TGGAGCAGGA GCAGCGGTTC CGCGACAGGG AGGAGCAGCG CTTCCGGGAG
GAGAAGCTGC AACGAGCAGA GCTCCAGGAC AGCCTCCTAG ATGAAGAACA GAGGCGACTC
CAGGAGGAAC GCCGAGAGCC AAACAGGAGC CGGCAACTGA GGGAAGAAAG CCAGAGGCGC
CGCACACTGT ACGCCAAACC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763323 NES10748462 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33029285 SNP G G G G G G G G G G A G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763323 NES10748462 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351905 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1168 bp downstream
Tssr961 transcription start site region 961 592 bp downstream
Tssr962 transcription start site region 962 525 bp upstream
Tssr963 transcription start site region 963 562 bp upstream
Tssr964 transcription start site region 964 658 bp upstream
Tssr30347 transcription start site region 30347 1125 bp downstream
Tssr30348 transcription start site region 30348 1105 bp downstream
Tssr30349 transcription start site region 30349 1093 bp downstream
Tssr30350 transcription start site region 30350 1049 bp downstream
Tssr30351 transcription start site region 30351 1025 bp downstream
Tssr30352 transcription start site region 30352 975 bp downstream
Tssr30353 transcription start site region 30353 956 bp downstream
Tssr30354 transcription start site region 30354 941 bp downstream
Tssr30355 transcription start site region 30355 922 bp downstream
Tssr30356 transcription start site region 30356 868 bp downstream
Tssr30357 transcription start site region 30357 813 bp downstream
Tssr30358 transcription start site region 30358 695 bp downstream
Tssr30359 transcription start site region 30359 669 bp downstream
Tssr30360 transcription start site region 30360 639 bp downstream
Tssr30361 transcription start site region 30361 314 bp downstream
Tssr30362 transcription start site region 30362 298 bp downstream
Tssr30363 transcription start site region 30363 156 bp downstream
Tssr30364 transcription start site region 30364 84 bp downstream
Tssr30365 transcription start site region 30365 49 bp downstream
Tssr30366 transcription start site region 30366 within coordinates
Tssr30367 transcription start site region 30367 38 bp upstream
Tssr30368 transcription start site region 30368 55 bp upstream
Tssr30369 transcription start site region 30369 68 bp upstream
Tssr30370 transcription start site region 30370 75 bp upstream
Tssr30371 transcription start site region 30371 95 bp upstream
Tssr30372 transcription start site region 30372 108 bp upstream
Tssr30373 transcription start site region 30373 159 bp upstream
Tssr30374 transcription start site region 30374 177 bp upstream
Tssr30375 transcription start site region 30375 190 bp upstream
Tssr30376 transcription start site region 30376 216 bp upstream
Tssr30377 transcription start site region 30377 238 bp upstream
Tssr30378 transcription start site region 30378 271 bp upstream
Tssr30379 transcription start site region 30379 289 bp upstream
Tssr30380 transcription start site region 30380 369 bp upstream
Tssr30381 transcription start site region 30381 387 bp upstream
Tssr30382 transcription start site region 30382 446 bp upstream
Tssr30383 transcription start site region 30383 457 bp upstream
Tssr30384 transcription start site region 30384 466 bp upstream
Tssr30385 transcription start site region 30385 482 bp upstream
Tssr30386 transcription start site region 30386 503 bp upstream
Tssr30387 transcription start site region 30387 594 bp upstream
Tssr30388 transcription start site region 30388 620 bp upstream
Tssr30389 transcription start site region 30389 634 bp upstream
Tssr30390 transcription start site region 30390 706 bp upstream
Tssr30391 transcription start site region 30391 725 bp upstream
Tssr30392 transcription start site region 30392 743 bp upstream
Tssr30393 transcription start site region 30393 760 bp upstream
Tssr30394 transcription start site region 30394 780 bp upstream
Tssr30395 transcription start site region 30395 805 bp upstream
Tssr30396 transcription start site region 30396 854 bp upstream
Tssr30397 transcription start site region 30397 871 bp upstream
Tssr30398 transcription start site region 30398 946 bp upstream
Tssr30399 transcription start site region 30399 993 bp upstream
Tssr30400 transcription start site region 30400 1478 bp upstream
Tssr30401 transcription start site region 30401 1498 bp upstream
Tssr30402 transcription start site region 30402 1597 bp upstream
Tssr30403 transcription start site region 30403 1637 bp upstream
Tssr34352 transcription start site region 34352 714 bp upstream
Tssr34353 transcription start site region 34353 708 bp upstream
Tssr34354 transcription start site region 34354 657 bp upstream
Tssr34355 transcription start site region 34355 560 bp upstream
Tssr34356 transcription start site region 34356 107 bp downstream
Tssr34357 transcription start site region 34357 152 bp downstream
Tssr34358 transcription start site region 34358 204 bp downstream
Tssr34359 transcription start site region 34359 273 bp downstream
Tssr34360 transcription start site region 34360 354 bp downstream
Tssr34361 transcription start site region 34361 375 bp downstream
Tssr34362 transcription start site region 34362 424 bp downstream
Tssr34363 transcription start site region 34363 451 bp downstream
Tssr34364 transcription start site region 34364 468 bp downstream
Tssr34365 transcription start site region 34365 482 bp downstream
Tssr34366 transcription start site region 34366 542 bp downstream
Tssr34367 transcription start site region 34367 675 bp downstream
Tssr34368 transcription start site region 34368 754 bp downstream
Tssr34369 transcription start site region 34369 779 bp downstream
Tssr34370 transcription start site region 34370 793 bp downstream
Tssr34371 transcription start site region 34371 847 bp downstream
Tssr34372 transcription start site region 34372 1610 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory