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rs33029288 SNP Detail
Summary
  • ID
    rs33029288
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93352087 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAGAGGCCG CAGCGGGCGG
AGGAGCGCCT GGAGCAGGAG CAGCGGTTCC GCGACAGGGA GGAGCAGCGC TTCCGGGAGG
AGAAGCTGCA ACGAGCAGAG CTCCAGGACA GCCTCCTAGA TGAAGAACAG AGGCGACTCC
AGGAGGAACG CCGAGAGCCA AACAGGAGCC GGCAACTGAG GGAAGAAAGC CAGAGGCGCC
R
CACACTGTAC GCCAAACCCA GCCAGAGGCA GCGTAGGGAG GAGGAGCTAC GCGAGGAACG
GCTGTTGCAA GAAGAGCAGC GCCAGCAGCG GGAGAGGAAA CACCGCAGGG AGGAGGATCT
GCAGCAGGAG GAAAAGCGGC TGCAGCAAGA CGAAGAGCAA CTGCAGCGAG AAAGGAGGCG
CCTGCAGCGG GAGAGGCAGT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763326 NES10748463 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33029288 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763326 NES10748463 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352087 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1350 bp downstream
Tssr961 transcription start site region 961 774 bp downstream
Tssr962 transcription start site region 962 343 bp upstream
Tssr963 transcription start site region 963 380 bp upstream
Tssr964 transcription start site region 964 476 bp upstream
Tssr30347 transcription start site region 30347 1307 bp downstream
Tssr30348 transcription start site region 30348 1287 bp downstream
Tssr30349 transcription start site region 30349 1275 bp downstream
Tssr30350 transcription start site region 30350 1231 bp downstream
Tssr30351 transcription start site region 30351 1207 bp downstream
Tssr30352 transcription start site region 30352 1157 bp downstream
Tssr30353 transcription start site region 30353 1138 bp downstream
Tssr30354 transcription start site region 30354 1123 bp downstream
Tssr30355 transcription start site region 30355 1104 bp downstream
Tssr30356 transcription start site region 30356 1050 bp downstream
Tssr30357 transcription start site region 30357 995 bp downstream
Tssr30358 transcription start site region 30358 877 bp downstream
Tssr30359 transcription start site region 30359 851 bp downstream
Tssr30360 transcription start site region 30360 821 bp downstream
Tssr30361 transcription start site region 30361 496 bp downstream
Tssr30362 transcription start site region 30362 480 bp downstream
Tssr30363 transcription start site region 30363 338 bp downstream
Tssr30364 transcription start site region 30364 266 bp downstream
Tssr30365 transcription start site region 30365 231 bp downstream
Tssr30366 transcription start site region 30366 178 bp downstream
Tssr30367 transcription start site region 30367 139 bp downstream
Tssr30368 transcription start site region 30368 115 bp downstream
Tssr30369 transcription start site region 30369 111 bp downstream
Tssr30370 transcription start site region 30370 102 bp downstream
Tssr30371 transcription start site region 30371 75 bp downstream
Tssr30372 transcription start site region 30372 65 bp downstream
Tssr30373 transcription start site region 30373 12 bp downstream
Tssr30374 transcription start site region 30374 within coordinates
Tssr30375 transcription start site region 30375 8 bp upstream
Tssr30376 transcription start site region 30376 34 bp upstream
Tssr30377 transcription start site region 30377 56 bp upstream
Tssr30378 transcription start site region 30378 89 bp upstream
Tssr30379 transcription start site region 30379 107 bp upstream
Tssr30380 transcription start site region 30380 187 bp upstream
Tssr30381 transcription start site region 30381 205 bp upstream
Tssr30382 transcription start site region 30382 264 bp upstream
Tssr30383 transcription start site region 30383 275 bp upstream
Tssr30384 transcription start site region 30384 284 bp upstream
Tssr30385 transcription start site region 30385 300 bp upstream
Tssr30386 transcription start site region 30386 321 bp upstream
Tssr30387 transcription start site region 30387 412 bp upstream
Tssr30388 transcription start site region 30388 438 bp upstream
Tssr30389 transcription start site region 30389 452 bp upstream
Tssr30390 transcription start site region 30390 524 bp upstream
Tssr30391 transcription start site region 30391 543 bp upstream
Tssr30392 transcription start site region 30392 561 bp upstream
Tssr30393 transcription start site region 30393 578 bp upstream
Tssr30394 transcription start site region 30394 598 bp upstream
Tssr30395 transcription start site region 30395 623 bp upstream
Tssr30396 transcription start site region 30396 672 bp upstream
Tssr30397 transcription start site region 30397 689 bp upstream
Tssr30398 transcription start site region 30398 764 bp upstream
Tssr30399 transcription start site region 30399 811 bp upstream
Tssr30400 transcription start site region 30400 1296 bp upstream
Tssr30401 transcription start site region 30401 1316 bp upstream
Tssr30402 transcription start site region 30402 1415 bp upstream
Tssr30403 transcription start site region 30403 1455 bp upstream
Tssr34352 transcription start site region 34352 896 bp upstream
Tssr34353 transcription start site region 34353 890 bp upstream
Tssr34354 transcription start site region 34354 839 bp upstream
Tssr34355 transcription start site region 34355 742 bp upstream
Tssr34356 transcription start site region 34356 61 bp upstream
Tssr34357 transcription start site region 34357 within coordinates
Tssr34358 transcription start site region 34358 22 bp downstream
Tssr34359 transcription start site region 34359 91 bp downstream
Tssr34360 transcription start site region 34360 172 bp downstream
Tssr34361 transcription start site region 34361 193 bp downstream
Tssr34362 transcription start site region 34362 242 bp downstream
Tssr34363 transcription start site region 34363 269 bp downstream
Tssr34364 transcription start site region 34364 286 bp downstream
Tssr34365 transcription start site region 34365 300 bp downstream
Tssr34366 transcription start site region 34366 360 bp downstream
Tssr34367 transcription start site region 34367 493 bp downstream
Tssr34368 transcription start site region 34368 572 bp downstream
Tssr34369 transcription start site region 34369 597 bp downstream
Tssr34370 transcription start site region 34370 611 bp downstream
Tssr34371 transcription start site region 34371 665 bp downstream
Tssr34372 transcription start site region 34372 1428 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory