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rs33029291 SNP Detail
Summary
  • ID
    rs33029291
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:93352146 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGAGCAGCG CTTCCGGGAG
GAGAAGCTGC AACGAGCAGA GCTCCAGGAC AGCCTCCTAG ATGAAGAACA GAGGCGACTC
CAGGAGGAAC GCCGAGAGCC AAACAGGAGC CGGCAACTGA GGGAAGAAAG CCAGAGGCGC
CGCACACTGT ACGCCAAACC CAGCCAGAGG CAGCGTAGGG AGGAGGAGCT ACGCGAGGAA
M
GGCTGTTGCA AGAAGAGCAG CGCCAGCAGC GGGAGAGGAA ACACCGCAGG GAGGAGGATC
TGCAGCAGGA GGAAAAGCGG CTGCAGCAAG ACGAAGAGCA ACTGCAGCGA GAAAGGAGGC
GCCTGCAGCG GGAGAGGCAG TATCAGGAGG AGGACCTGCA ACAGGAGGAA GAGCGGCTGC
AGCAGGAGGA AGAGCGGCTG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763329 NES10748464 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C A C C A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33029291 SNP C C C C C C C C C C A C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763329 NES10748464 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352146 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 45 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1409 bp downstream
Tssr961 transcription start site region 961 833 bp downstream
Tssr962 transcription start site region 962 284 bp upstream
Tssr963 transcription start site region 963 321 bp upstream
Tssr964 transcription start site region 964 417 bp upstream
Tssr30347 transcription start site region 30347 1366 bp downstream
Tssr30348 transcription start site region 30348 1346 bp downstream
Tssr30349 transcription start site region 30349 1334 bp downstream
Tssr30350 transcription start site region 30350 1290 bp downstream
Tssr30351 transcription start site region 30351 1266 bp downstream
Tssr30352 transcription start site region 30352 1216 bp downstream
Tssr30353 transcription start site region 30353 1197 bp downstream
Tssr30354 transcription start site region 30354 1182 bp downstream
Tssr30355 transcription start site region 30355 1163 bp downstream
Tssr30356 transcription start site region 30356 1109 bp downstream
Tssr30357 transcription start site region 30357 1054 bp downstream
Tssr30358 transcription start site region 30358 936 bp downstream
Tssr30359 transcription start site region 30359 910 bp downstream
Tssr30360 transcription start site region 30360 880 bp downstream
Tssr30361 transcription start site region 30361 555 bp downstream
Tssr30362 transcription start site region 30362 539 bp downstream
Tssr30363 transcription start site region 30363 397 bp downstream
Tssr30364 transcription start site region 30364 325 bp downstream
Tssr30365 transcription start site region 30365 290 bp downstream
Tssr30366 transcription start site region 30366 237 bp downstream
Tssr30367 transcription start site region 30367 198 bp downstream
Tssr30368 transcription start site region 30368 174 bp downstream
Tssr30369 transcription start site region 30369 170 bp downstream
Tssr30370 transcription start site region 30370 161 bp downstream
Tssr30371 transcription start site region 30371 134 bp downstream
Tssr30372 transcription start site region 30372 124 bp downstream
Tssr30373 transcription start site region 30373 71 bp downstream
Tssr30374 transcription start site region 30374 57 bp downstream
Tssr30375 transcription start site region 30375 44 bp downstream
Tssr30376 transcription start site region 30376 8 bp downstream
Tssr30377 transcription start site region 30377 within coordinates
Tssr30378 transcription start site region 30378 30 bp upstream
Tssr30379 transcription start site region 30379 48 bp upstream
Tssr30380 transcription start site region 30380 128 bp upstream
Tssr30381 transcription start site region 30381 146 bp upstream
Tssr30382 transcription start site region 30382 205 bp upstream
Tssr30383 transcription start site region 30383 216 bp upstream
Tssr30384 transcription start site region 30384 225 bp upstream
Tssr30385 transcription start site region 30385 241 bp upstream
Tssr30386 transcription start site region 30386 262 bp upstream
Tssr30387 transcription start site region 30387 353 bp upstream
Tssr30388 transcription start site region 30388 379 bp upstream
Tssr30389 transcription start site region 30389 393 bp upstream
Tssr30390 transcription start site region 30390 465 bp upstream
Tssr30391 transcription start site region 30391 484 bp upstream
Tssr30392 transcription start site region 30392 502 bp upstream
Tssr30393 transcription start site region 30393 519 bp upstream
Tssr30394 transcription start site region 30394 539 bp upstream
Tssr30395 transcription start site region 30395 564 bp upstream
Tssr30396 transcription start site region 30396 613 bp upstream
Tssr30397 transcription start site region 30397 630 bp upstream
Tssr30398 transcription start site region 30398 705 bp upstream
Tssr30399 transcription start site region 30399 752 bp upstream
Tssr30400 transcription start site region 30400 1237 bp upstream
Tssr30401 transcription start site region 30401 1257 bp upstream
Tssr30402 transcription start site region 30402 1356 bp upstream
Tssr30403 transcription start site region 30403 1396 bp upstream
Tssr34352 transcription start site region 34352 955 bp upstream
Tssr34353 transcription start site region 34353 949 bp upstream
Tssr34354 transcription start site region 34354 898 bp upstream
Tssr34355 transcription start site region 34355 801 bp upstream
Tssr34356 transcription start site region 34356 120 bp upstream
Tssr34357 transcription start site region 34357 55 bp upstream
Tssr34358 transcription start site region 34358 within coordinates
Tssr34359 transcription start site region 34359 32 bp downstream
Tssr34360 transcription start site region 34360 113 bp downstream
Tssr34361 transcription start site region 34361 134 bp downstream
Tssr34362 transcription start site region 34362 183 bp downstream
Tssr34363 transcription start site region 34363 210 bp downstream
Tssr34364 transcription start site region 34364 227 bp downstream
Tssr34365 transcription start site region 34365 241 bp downstream
Tssr34366 transcription start site region 34366 301 bp downstream
Tssr34367 transcription start site region 34367 434 bp downstream
Tssr34368 transcription start site region 34368 513 bp downstream
Tssr34369 transcription start site region 34369 538 bp downstream
Tssr34370 transcription start site region 34370 552 bp downstream
Tssr34371 transcription start site region 34371 606 bp downstream
Tssr34372 transcription start site region 34372 1369 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory