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rs33030004 SNP Detail
Summary
  • ID
    rs33030004
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93352188 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCAGGACAG CCTCCTAGAT
GAAGAACAGA GGCGACTCCA GGAGGAACGC CGAGAGCCAA ACAGGAGCCG GCAACTGAGG
GAAGAAAGCC AGAGGCGCCG CACACTGTAC GCCAAACCCA GCCAGAGGCA GCGTAGGGAG
GAGGAGCTAC GCGAGGAACG GCTGTTGCAA GAAGAGCAGC GCCAGCAGCG GGAGAGGAAA
Y
ACCGCAGGGA GGAGGATCTG CAGCAGGAGG AAAAGCGGCT GCAGCAAGAC GAAGAGCAAC
TGCAGCGAGA AAGGAGGCGC CTGCAGCGGG AGAGGCAGTA TCAGGAGGAG GACCTGCAAC
AGGAGGAAGA GCGGCTGCAG CAGGAGGAAG AGCGGCTGCA GAGAGAAAGA AGGCGCCTGC
AGCAGGAAAG GCAGTATCAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763332 NES10748465 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33030004 SNP C C C C C C T C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763332 NES10748465 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352188 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 87 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1451 bp downstream
Tssr961 transcription start site region 961 875 bp downstream
Tssr962 transcription start site region 962 242 bp upstream
Tssr963 transcription start site region 963 279 bp upstream
Tssr964 transcription start site region 964 375 bp upstream
Tssr30347 transcription start site region 30347 1408 bp downstream
Tssr30348 transcription start site region 30348 1388 bp downstream
Tssr30349 transcription start site region 30349 1376 bp downstream
Tssr30350 transcription start site region 30350 1332 bp downstream
Tssr30351 transcription start site region 30351 1308 bp downstream
Tssr30352 transcription start site region 30352 1258 bp downstream
Tssr30353 transcription start site region 30353 1239 bp downstream
Tssr30354 transcription start site region 30354 1224 bp downstream
Tssr30355 transcription start site region 30355 1205 bp downstream
Tssr30356 transcription start site region 30356 1151 bp downstream
Tssr30357 transcription start site region 30357 1096 bp downstream
Tssr30358 transcription start site region 30358 978 bp downstream
Tssr30359 transcription start site region 30359 952 bp downstream
Tssr30360 transcription start site region 30360 922 bp downstream
Tssr30361 transcription start site region 30361 597 bp downstream
Tssr30362 transcription start site region 30362 581 bp downstream
Tssr30363 transcription start site region 30363 439 bp downstream
Tssr30364 transcription start site region 30364 367 bp downstream
Tssr30365 transcription start site region 30365 332 bp downstream
Tssr30366 transcription start site region 30366 279 bp downstream
Tssr30367 transcription start site region 30367 240 bp downstream
Tssr30368 transcription start site region 30368 216 bp downstream
Tssr30369 transcription start site region 30369 212 bp downstream
Tssr30370 transcription start site region 30370 203 bp downstream
Tssr30371 transcription start site region 30371 176 bp downstream
Tssr30372 transcription start site region 30372 166 bp downstream
Tssr30373 transcription start site region 30373 113 bp downstream
Tssr30374 transcription start site region 30374 99 bp downstream
Tssr30375 transcription start site region 30375 86 bp downstream
Tssr30376 transcription start site region 30376 50 bp downstream
Tssr30377 transcription start site region 30377 24 bp downstream
Tssr30378 transcription start site region 30378 2 bp downstream
Tssr30379 transcription start site region 30379 6 bp upstream
Tssr30380 transcription start site region 30380 86 bp upstream
Tssr30381 transcription start site region 30381 104 bp upstream
Tssr30382 transcription start site region 30382 163 bp upstream
Tssr30383 transcription start site region 30383 174 bp upstream
Tssr30384 transcription start site region 30384 183 bp upstream
Tssr30385 transcription start site region 30385 199 bp upstream
Tssr30386 transcription start site region 30386 220 bp upstream
Tssr30387 transcription start site region 30387 311 bp upstream
Tssr30388 transcription start site region 30388 337 bp upstream
Tssr30389 transcription start site region 30389 351 bp upstream
Tssr30390 transcription start site region 30390 423 bp upstream
Tssr30391 transcription start site region 30391 442 bp upstream
Tssr30392 transcription start site region 30392 460 bp upstream
Tssr30393 transcription start site region 30393 477 bp upstream
Tssr30394 transcription start site region 30394 497 bp upstream
Tssr30395 transcription start site region 30395 522 bp upstream
Tssr30396 transcription start site region 30396 571 bp upstream
Tssr30397 transcription start site region 30397 588 bp upstream
Tssr30398 transcription start site region 30398 663 bp upstream
Tssr30399 transcription start site region 30399 710 bp upstream
Tssr30400 transcription start site region 30400 1195 bp upstream
Tssr30401 transcription start site region 30401 1215 bp upstream
Tssr30402 transcription start site region 30402 1314 bp upstream
Tssr30403 transcription start site region 30403 1354 bp upstream
Tssr34352 transcription start site region 34352 997 bp upstream
Tssr34353 transcription start site region 34353 991 bp upstream
Tssr34354 transcription start site region 34354 940 bp upstream
Tssr34355 transcription start site region 34355 843 bp upstream
Tssr34356 transcription start site region 34356 162 bp upstream
Tssr34357 transcription start site region 34357 97 bp upstream
Tssr34358 transcription start site region 34358 38 bp upstream
Tssr34359 transcription start site region 34359 within coordinates
Tssr34360 transcription start site region 34360 71 bp downstream
Tssr34361 transcription start site region 34361 92 bp downstream
Tssr34362 transcription start site region 34362 141 bp downstream
Tssr34363 transcription start site region 34363 168 bp downstream
Tssr34364 transcription start site region 34364 185 bp downstream
Tssr34365 transcription start site region 34365 199 bp downstream
Tssr34366 transcription start site region 34366 259 bp downstream
Tssr34367 transcription start site region 34367 392 bp downstream
Tssr34368 transcription start site region 34368 471 bp downstream
Tssr34369 transcription start site region 34369 496 bp downstream
Tssr34370 transcription start site region 34370 510 bp downstream
Tssr34371 transcription start site region 34371 564 bp downstream
Tssr34372 transcription start site region 34372 1327 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory