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rs33030007 SNP Detail
Summary
  • ID
    rs33030007
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93353584 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGGGACAGA TCATTCCGCC
GGGAGCAAGA GCTCAGACGG GACAGAAAAT TCCATGAGGA AGAAGAGCGC CGCGAGGAAC
TGGAGGAAGA GCAGCGTGGC CAAGAGCGGG ACCGTTTGAG GGTGGAGGAG CAGCTTCGCG
GACAGCGAGA GGAAGAGCAG CGCCGCCGCC AGGAATGTGA CAGAAAATTA CACCGGGAAC
W
AGAGGTCCGC CAGGAACTGG AGGAAGAGCG GCTGCGGGAC AGAAAGCTCC GCAGGGAACA
AGAGCTCAGG CGCGACAGAA AATTCCATGA GGAAGAAGAG CGCCGTCATG AGGAGTTCGA
GGAAAAGCAG CTGCGCCTCC AGGAACCGGA CAGAAGATTC CGCCGGGAAC AAGAGCTCCG
TCAGGAATGC GTCGAGGAAG                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763335 NES10748392 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T A T T A T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33030007 SNP T T T T T T T T T A T T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763335 NES10748392 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353584 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1483 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1151 bp downstream
Tssr963 transcription start site region 963 1115 bp downstream
Tssr964 transcription start site region 964 1016 bp downstream
Tssr30361 transcription start site region 30361 1993 bp downstream
Tssr30362 transcription start site region 30362 1977 bp downstream
Tssr30363 transcription start site region 30363 1835 bp downstream
Tssr30364 transcription start site region 30364 1763 bp downstream
Tssr30365 transcription start site region 30365 1728 bp downstream
Tssr30366 transcription start site region 30366 1675 bp downstream
Tssr30367 transcription start site region 30367 1636 bp downstream
Tssr30368 transcription start site region 30368 1612 bp downstream
Tssr30369 transcription start site region 30369 1608 bp downstream
Tssr30370 transcription start site region 30370 1599 bp downstream
Tssr30371 transcription start site region 30371 1572 bp downstream
Tssr30372 transcription start site region 30372 1562 bp downstream
Tssr30373 transcription start site region 30373 1509 bp downstream
Tssr30374 transcription start site region 30374 1495 bp downstream
Tssr30375 transcription start site region 30375 1482 bp downstream
Tssr30376 transcription start site region 30376 1446 bp downstream
Tssr30377 transcription start site region 30377 1420 bp downstream
Tssr30378 transcription start site region 30378 1398 bp downstream
Tssr30379 transcription start site region 30379 1381 bp downstream
Tssr30380 transcription start site region 30380 1302 bp downstream
Tssr30381 transcription start site region 30381 1285 bp downstream
Tssr30382 transcription start site region 30382 1230 bp downstream
Tssr30383 transcription start site region 30383 1219 bp downstream
Tssr30384 transcription start site region 30384 1210 bp downstream
Tssr30385 transcription start site region 30385 1185 bp downstream
Tssr30386 transcription start site region 30386 1163 bp downstream
Tssr30387 transcription start site region 30387 1069 bp downstream
Tssr30388 transcription start site region 30388 1050 bp downstream
Tssr30389 transcription start site region 30389 1028 bp downstream
Tssr30390 transcription start site region 30390 957 bp downstream
Tssr30391 transcription start site region 30391 947 bp downstream
Tssr30392 transcription start site region 30392 929 bp downstream
Tssr30393 transcription start site region 30393 918 bp downstream
Tssr30394 transcription start site region 30394 892 bp downstream
Tssr30395 transcription start site region 30395 865 bp downstream
Tssr30396 transcription start site region 30396 815 bp downstream
Tssr30397 transcription start site region 30397 799 bp downstream
Tssr30398 transcription start site region 30398 721 bp downstream
Tssr30399 transcription start site region 30399 642 bp downstream
Tssr30400 transcription start site region 30400 193 bp downstream
Tssr30401 transcription start site region 30401 172 bp downstream
Tssr30402 transcription start site region 30402 72 bp downstream
Tssr30403 transcription start site region 30403 35 bp downstream
Tssr30404 transcription start site region 30404 1096 bp upstream
Tssr30405 transcription start site region 30405 1207 bp upstream
Tssr30406 transcription start site region 30406 1355 bp upstream
Tssr30407 transcription start site region 30407 1550 bp upstream
Tssr34356 transcription start site region 34356 1558 bp upstream
Tssr34357 transcription start site region 34357 1493 bp upstream
Tssr34358 transcription start site region 34358 1434 bp upstream
Tssr34359 transcription start site region 34359 1359 bp upstream
Tssr34360 transcription start site region 34360 1314 bp upstream
Tssr34361 transcription start site region 34361 1257 bp upstream
Tssr34362 transcription start site region 34362 1244 bp upstream
Tssr34363 transcription start site region 34363 1219 bp upstream
Tssr34364 transcription start site region 34364 1204 bp upstream
Tssr34365 transcription start site region 34365 1178 bp upstream
Tssr34366 transcription start site region 34366 1110 bp upstream
Tssr34367 transcription start site region 34367 945 bp upstream
Tssr34368 transcription start site region 34368 915 bp upstream
Tssr34369 transcription start site region 34369 889 bp upstream
Tssr34370 transcription start site region 34370 863 bp upstream
Tssr34371 transcription start site region 34371 720 bp upstream
Tssr34372 transcription start site region 34372 59 bp upstream
Tssr34373 transcription start site region 34373 1099 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory