rs33030011 SNP Detail

Summary

• ID
  rs33030011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93356444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGAACA GAGGACAAAT
  TTCTAGAGGT CTCTTTATTA TACTTAGATG CTCACAGTAC TTTGAGGCTT TATACTACCT
  GGAAGACATT CTTGTTCAAA TAATTGGACT GTTAAAAATC AATAAATGTT TGGCAAATAT
  TTTTTCTTGT CTGTTTTAAT TATGTGCCTA TCATAACTCA TATATAGTCT GGAAATTCAT
  R
  TATTCCCAAT ATCTTATGGT AGTTTTACTA TTAGCTATGT CCAAATAAGA AAGGAAGAAA
  GAAACTTTGA TTTTTTTTTC TACAAATTTT CCCAATTAAG GTGACTCCTA TATTATTTAA
  GAGTAAGACT TGGGCCGGGC GTGGTGGTGC ACGCCTTTAA TCCCAGCACT TGGGAGGCAG
  AGGCAGGCGG ATTTCTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46763341	NES10748396	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33030011					SNP	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763341	NES10748396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93356444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	1117 bp distal
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	1274 bp upstream
Rr580539	regulatory region 580539	953 bp distal
Tchh	trichohyalin	60 bp downstream
Tssr30404	transcription start site region 30404	1756 bp downstream
Tssr30405	transcription start site region 30405	1641 bp downstream
Tssr30406	transcription start site region 30406	1494 bp downstream
Tssr30407	transcription start site region 30407	1304 bp downstream
Tssr34373	transcription start site region 34373	1734 bp upstream