rs33030257 SNP Detail

Summary

• ID
  rs33030257
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129565044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCCAGAA TCAATCTATA CTTTCCAGAG GATCTGGAAG
  TGTAGAGTGC TTTAGGGAAA AGAACCGCTC GCTGTATTCA GGGTGGGAAG AATGCTGTTA
  M
  ATTGTTTGCA GAGTTCTTGC TAGGTTACAC ATACTCCCTT CCTAGAGATG TGAAGGCTCA
  GAAATGGAGG AACGTAGGGC TTGTTGCAGT GTGTTAGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45728246	mCV22371490	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss147445868	ENSMUSSNP1744901	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321314544	CHEV_4_129348495	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33030257					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129565044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14905	CpG island 14905	846 bp proximal
Kpna6	karyopherin subunit alpha 6	within coordinates
Rr85536	regulatory region 85536	1844 bp distal
Rr85537	regulatory region 85537	1044 bp distal
Rr96442	regulatory region 96442	1895 bp distal
Rr100093	regulatory region 100093	within coordinates
Rr398522	regulatory region 398522	231 bp upstream
Tssr43552	transcription start site region 43552	1446 bp downstream
Tssr43553	transcription start site region 43553	1461 bp downstream
Tssr43554	transcription start site region 43554	1531 bp downstream