rs33031754 SNP Detail

Summary

• ID
  rs33031754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172706593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGCTA GAACAAACAC
  AGAATTCTCC TCCTCCTCCT CCCCCCTCCC CCTCCCCCCT CCTCCTCCGT AGGCTAATTA
  CTAGTTTATG TGTTGGGTAT TTTTCATGCA TGTTTGTGTA CCAAGTGCAT GTAGTACCTG
  AGAAGGCCAG AGGAGGGCAT TAGATCCCAC AGAACTTGAG TGATAAACAC TGTGAGCAGT
  Y
  GTGTGGGTGC TGGGAACTGA ACCGTCAAGG GCAGCCAGTG CGCTTAACTG CAGACCCATG
  TCTCCAGCCC TCCACCCTCC TTTTTAGGAG ACTTTGAGCA CAGGAAGTTT AAGCGACTGC
  GCCCAGCTCA GGATAAGCCC GCCTTACACT CTGCCCCACC CCCTGCTTCT CACGTGACCC
  ATGCCCACTC TTCCCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45228599	mCV22950758	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148324444	ENSMUSSNP2136462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320620581	CHEV_2_172690301	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33031754					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172706593 () rs orientation: forward

Symbol	Name	Function Class
1700055K11Rik	RIKEN cDNA 1700055K11 gene	1027 bp downstream
Cpgi12832	CpG island 12832	1087 bp distal
Gm36254	predicted gene, 36254	1684 bp upstream
Gm56447	predicted gene, 56447	459 bp upstream
Gm74706	predicted gene, 74706	within coordinates
Rr1066	regulatory region 1066	633 bp downstream
Rr374298	regulatory region 374298	316 bp upstream
Rr407149	regulatory region 407149	668 bp distal
Rr571761	regulatory region 571761	736 bp distal
Rr571762	regulatory region 571762	37 bp distal
Rr571763	regulatory region 571763	736 bp proximal
Rr571764	regulatory region 571764	1995 bp proximal