rs33032717 SNP Detail

Summary

• ID
  rs33032717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116678930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC ACCTTCACTC TGTGCCAGGC
  R
  CTCTCTTCCC GCGACCTTAG AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45728731	mCV22661470	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss147281504	ENSMUSSNP3793635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321278288	CHEV_4_116494338	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33032717					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116678930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	78 bp distal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	225 bp upstream
Rr597993	regulatory region 597993	within coordinates
Tssr42929	transcription start site region 42929	846 bp upstream
Tssr42930	transcription start site region 42930	827 bp upstream
Tssr42931	transcription start site region 42931	246 bp upstream
Tssr42932	transcription start site region 42932	234 bp upstream
Tssr42933	transcription start site region 42933	212 bp upstream