rs33034853 SNP Detail

Summary

• ID
  rs33034853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71063073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGACGGGG GCCCGCCCAC GTGAGGGAGA GGAAGTGAGA
  GGGCTGACAC TGCAGGAGTG GAAGGAGTGA GTGAACGTTC AAACCAGTTC CAGCCCTGGG
  R
  CACACGCACG GTTAAAGTGC TGGAGACGGC AGCTCGCGAG TGGGAGAGCT TTATTTCAAG
  AGCCACCATG AGTGGCTGAT GGTGAGCCCA GAAAACTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46225876	mCV22785598	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss145127951	ENSMUSSNP2952837	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33034853					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71063073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	1656 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	489 bp proximal
Gm45546	predicted gene 45546	2 bp upstream
Gm63790	predicted gene, 63790	within coordinates
Rr400904	regulatory region 400904	421 bp upstream
Rr400905	regulatory region 400905	1460 bp upstream
Rr664833	regulatory region 664833	1619 bp distal
Rr664834	regulatory region 664834	1971 bp distal
Rr664835	regulatory region 664835	1061 bp distal
Rr664836	regulatory region 664836	20 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	506 bp proximal
Rr664839	regulatory region 664839	1186 bp proximal
Rr664840	regulatory region 664840	1716 bp proximal
Ssbp4	single stranded DNA binding protein 4	1989 bp upstream
Tssr77777	transcription start site region 77777	11 bp downstream
Tssr77778	transcription start site region 77778	276 bp upstream