rs33035527 SNP Detail

Summary

• ID
  rs33035527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85601338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGGTGA TTGGCTGGCC
  AGTGATGCCA CAGCATCCAC CTGTCTATAT CTGCTGAGTG CTGGGAGTGC AAATGGCTGC
  CACTTATGCG TCTTTTTATG TGGATCCTGG GTCTCAAACT CGGGTCCTTG TGCTTAAACA
  CCAAGCCTTT ACAAACTGGG TTGTCTCCTC AGTCCTTGAA AATAATTTAT TAATTGTAAT
  Y
  TGGCCAGGAG CTGTGCAACT CAACTATGAA CTCCAGATTA ATCCCTGTTT TGTGCAACTG
  GTAGATGTAA AGAAGGAAAA TTCATCATTT TCCTTGGCTG GTAACCAACA AACCCGAGCA
  AGGACCAACC AAAATGAGGA CTCTGAGATA ATAGGTAAGG ATAACGGAAA GAATTGAAAC
  AGTATCCAGG CAAGGGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435313	NES12806070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33035527					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435313	NES12806070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85601338 () rs orientation: forward

Symbol	Name	Function Class
Gm55351	predicted gene, 55351	1265 bp upstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7680	transcription start site region 7680	89 bp upstream