rs33035529 SNP Detail

Summary

• ID
  rs33035529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85600829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATATATA AATGTTATAC
  TGAAGTTAGA ATTTTTAATT TTATCTTCAT TTATTTTTTT GAAACAGGGT CTTGCTTTGT
  AGCCCAGGCT ATCTGTGAAC TTATGTCCCA CCATCTTAGC CTTCCCCAAC TGGGATTGCA
  GGTGTGTCTC ACCATGCCTG GTTAATTTTT ATCTTTAAAA TATCAAAATC AATTCTCTAT
  Y
  CAAGGATTCT AGGAATGGCT AGAAAGGAAG ATTAAGAGCA GAGAGGGCAG GAAATTTCAG
  GAAGAGGGAT CATTCATGGT ATTCAAAATG CTCTTCTAGA GAGTTAAATG AAAATACTTT
  GTGTATATCT GTATGTGTTT GTGTGTGTGC ACATTTGTGT ACTTGTCTGT ATGTATATGT
  GTGCGTGTGT GTGCAGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435315	NES12806146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33035529					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435315	NES12806146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85600829 () rs orientation: forward

Symbol	Name	Function Class
Gm55351	predicted gene, 55351	1774 bp upstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7680	transcription start site region 7680	598 bp upstream