rs33035556 SNP Detail

Summary

• ID
  rs33035556
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGTCTTG ATGGCATTGT
  TAGTAGGAAT GAAGTGTAAG TTAATAGGGC ATTACCACTG ATGATGCCTG ATCAAGTTAG
  TTGGACCTGA AAAGACTCCC CGCACCATCT TCCAACTTTC AGCAACAGAA ATTTGCCTGT
  TTCGCAATTA AAATGGCATT GCTGTAAATA TCTCAGTTCT TCTTCAAACA TGGAATAAGA
  M
  TTAAATCAGG AGCACTGGCT ATTTCAAGCA GAAATATCTG TTGAAAATCT TCTTAAATTC
  CATTGTACTG ATCACAAGGA TGAAACCATT CTTATTCATT CATCTAGAAA GAATTTGTTG
  TTTTGATCAG CACACAATTA ACAAAAATTT CCAACAATAG TATGTTTTGA AATGAGTTGT
  TTCCATAGCT GGGGAAACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763311	NES10748505	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33035556					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763311	NES10748505	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	666 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	215 bp downstream
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	568 bp upstream
Tssr961	transcription start site region 961	1144 bp upstream
Tssr30345	transcription start site region 30345	470 bp downstream
Tssr30346	transcription start site region 30346	445 bp downstream
Tssr30347	transcription start site region 30347	592 bp upstream
Tssr30348	transcription start site region 30348	631 bp upstream
Tssr30349	transcription start site region 30349	637 bp upstream
Tssr30350	transcription start site region 30350	679 bp upstream
Tssr30351	transcription start site region 30351	710 bp upstream
Tssr30352	transcription start site region 30352	759 bp upstream
Tssr30353	transcription start site region 30353	771 bp upstream
Tssr30354	transcription start site region 30354	789 bp upstream
Tssr30355	transcription start site region 30355	808 bp upstream
Tssr30356	transcription start site region 30356	821 bp upstream
Tssr30357	transcription start site region 30357	919 bp upstream
Tssr30358	transcription start site region 30358	1034 bp upstream
Tssr30359	transcription start site region 30359	1063 bp upstream
Tssr30360	transcription start site region 30360	1093 bp upstream
Tssr30361	transcription start site region 30361	1418 bp upstream
Tssr30362	transcription start site region 30362	1432 bp upstream
Tssr30363	transcription start site region 30363	1575 bp upstream
Tssr30364	transcription start site region 30364	1646 bp upstream
Tssr30365	transcription start site region 30365	1681 bp upstream
Tssr30366	transcription start site region 30366	1733 bp upstream
Tssr30367	transcription start site region 30367	1777 bp upstream
Tssr30368	transcription start site region 30368	1794 bp upstream
Tssr30369	transcription start site region 30369	1807 bp upstream
Tssr30370	transcription start site region 30370	1814 bp upstream
Tssr30371	transcription start site region 30371	1834 bp upstream
Tssr30372	transcription start site region 30372	1847 bp upstream
Tssr30373	transcription start site region 30373	1898 bp upstream
Tssr30374	transcription start site region 30374	1916 bp upstream
Tssr30375	transcription start site region 30375	1929 bp upstream
Tssr30376	transcription start site region 30376	1955 bp upstream
Tssr30377	transcription start site region 30377	1977 bp upstream
Tssr34352	transcription start site region 34352	1005 bp downstream
Tssr34353	transcription start site region 34353	1026 bp downstream
Tssr34354	transcription start site region 34354	1036 bp downstream
Tssr34355	transcription start site region 34355	1174 bp downstream
Tssr34356	transcription start site region 34356	1846 bp downstream
Tssr34357	transcription start site region 34357	1891 bp downstream
Tssr34358	transcription start site region 34358	1943 bp downstream