rs33035559 SNP Detail

Summary

• ID
  rs33035559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGCCTG ATCAAGTTAG
  TTGGACCTGA AAAGACTCCC CGCACCATCT TCCAACTTTC AGCAACAGAA ATTTGCCTGT
  TTCGCAATTA AAATGGCATT GCTGTAAATA TCTCAGTTCT TCTTCAAACA TGGAATAAGA
  CTTAAATCAG GAGCACTGGC TATTTCAAGC AGAAATATCT GTTGAAAATC TTCTTAAATT
  Y
  CATTGTACTG ATCACAAGGA TGAAACCATT CTTATTCATT CATCTAGAAA GAATTTGTTG
  TTTTGATCAG CACACAATTA ACAAAAATTT CCAACAATAG TATGTTTTGA AATGAGTTGT
  TTCCATAGCT GGGGAAACAG GACAACATAT TTTCTTTGCT TTTTAAAAAG ATTTATTTAT
  TTATTTTATA TGTGAGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763314	NES10748506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33035559					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763314	NES10748506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	606 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	155 bp downstream
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	508 bp upstream
Tssr961	transcription start site region 961	1084 bp upstream
Tssr30345	transcription start site region 30345	530 bp downstream
Tssr30346	transcription start site region 30346	505 bp downstream
Tssr30347	transcription start site region 30347	532 bp upstream
Tssr30348	transcription start site region 30348	571 bp upstream
Tssr30349	transcription start site region 30349	577 bp upstream
Tssr30350	transcription start site region 30350	619 bp upstream
Tssr30351	transcription start site region 30351	650 bp upstream
Tssr30352	transcription start site region 30352	699 bp upstream
Tssr30353	transcription start site region 30353	711 bp upstream
Tssr30354	transcription start site region 30354	729 bp upstream
Tssr30355	transcription start site region 30355	748 bp upstream
Tssr30356	transcription start site region 30356	761 bp upstream
Tssr30357	transcription start site region 30357	859 bp upstream
Tssr30358	transcription start site region 30358	974 bp upstream
Tssr30359	transcription start site region 30359	1003 bp upstream
Tssr30360	transcription start site region 30360	1033 bp upstream
Tssr30361	transcription start site region 30361	1358 bp upstream
Tssr30362	transcription start site region 30362	1372 bp upstream
Tssr30363	transcription start site region 30363	1515 bp upstream
Tssr30364	transcription start site region 30364	1586 bp upstream
Tssr30365	transcription start site region 30365	1621 bp upstream
Tssr30366	transcription start site region 30366	1673 bp upstream
Tssr30367	transcription start site region 30367	1717 bp upstream
Tssr30368	transcription start site region 30368	1734 bp upstream
Tssr30369	transcription start site region 30369	1747 bp upstream
Tssr30370	transcription start site region 30370	1754 bp upstream
Tssr30371	transcription start site region 30371	1774 bp upstream
Tssr30372	transcription start site region 30372	1787 bp upstream
Tssr30373	transcription start site region 30373	1838 bp upstream
Tssr30374	transcription start site region 30374	1856 bp upstream
Tssr30375	transcription start site region 30375	1869 bp upstream
Tssr30376	transcription start site region 30376	1895 bp upstream
Tssr30377	transcription start site region 30377	1917 bp upstream
Tssr30378	transcription start site region 30378	1950 bp upstream
Tssr30379	transcription start site region 30379	1968 bp upstream
Tssr34352	transcription start site region 34352	945 bp downstream
Tssr34353	transcription start site region 34353	966 bp downstream
Tssr34354	transcription start site region 34354	976 bp downstream
Tssr34355	transcription start site region 34355	1114 bp downstream
Tssr34356	transcription start site region 34356	1786 bp downstream
Tssr34357	transcription start site region 34357	1831 bp downstream
Tssr34358	transcription start site region 34358	1883 bp downstream
Tssr34359	transcription start site region 34359	1952 bp downstream