rs33035562 SNP Detail

Summary

• ID
  rs33035562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93350721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA GACCACATGA CCCTGAGACG
  R
  TAGACCTGAC CCTAGAACTT CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46763317	NES10748460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss135485737	ENSMUSSNP1988033	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320838870	CHEV_3_93247336	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33035562					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763317	NES10748460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93350721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	111 bp proximal
Gm37245	predicted gene, 37245	within coordinates
Gm56800	predicted gene, 56800	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Tchh	trichohyalin	within coordinates
Tssr960	transcription start site region 960	13 bp upstream
Tssr961	transcription start site region 961	589 bp upstream
Tssr962	transcription start site region 962	1709 bp upstream
Tssr963	transcription start site region 963	1746 bp upstream
Tssr964	transcription start site region 964	1842 bp upstream
Tssr30345	transcription start site region 30345	1025 bp downstream
Tssr30346	transcription start site region 30346	1000 bp downstream
Tssr30347	transcription start site region 30347	37 bp upstream
Tssr30348	transcription start site region 30348	76 bp upstream
Tssr30349	transcription start site region 30349	82 bp upstream
Tssr30350	transcription start site region 30350	124 bp upstream
Tssr30351	transcription start site region 30351	155 bp upstream
Tssr30352	transcription start site region 30352	204 bp upstream
Tssr30353	transcription start site region 30353	216 bp upstream
Tssr30354	transcription start site region 30354	234 bp upstream
Tssr30355	transcription start site region 30355	253 bp upstream
Tssr30356	transcription start site region 30356	266 bp upstream
Tssr30357	transcription start site region 30357	364 bp upstream
Tssr30358	transcription start site region 30358	479 bp upstream
Tssr30359	transcription start site region 30359	508 bp upstream
Tssr30360	transcription start site region 30360	538 bp upstream
Tssr30361	transcription start site region 30361	863 bp upstream
Tssr30362	transcription start site region 30362	877 bp upstream
Tssr30363	transcription start site region 30363	1020 bp upstream
Tssr30364	transcription start site region 30364	1091 bp upstream
Tssr30365	transcription start site region 30365	1126 bp upstream
Tssr30366	transcription start site region 30366	1178 bp upstream
Tssr30367	transcription start site region 30367	1222 bp upstream
Tssr30368	transcription start site region 30368	1239 bp upstream
Tssr30369	transcription start site region 30369	1252 bp upstream
Tssr30370	transcription start site region 30370	1259 bp upstream
Tssr30371	transcription start site region 30371	1279 bp upstream
Tssr30372	transcription start site region 30372	1292 bp upstream
Tssr30373	transcription start site region 30373	1343 bp upstream
Tssr30374	transcription start site region 30374	1361 bp upstream
Tssr30375	transcription start site region 30375	1374 bp upstream
Tssr30376	transcription start site region 30376	1400 bp upstream
Tssr30377	transcription start site region 30377	1422 bp upstream
Tssr30378	transcription start site region 30378	1455 bp upstream
Tssr30379	transcription start site region 30379	1473 bp upstream
Tssr30380	transcription start site region 30380	1553 bp upstream
Tssr30381	transcription start site region 30381	1571 bp upstream
Tssr30382	transcription start site region 30382	1630 bp upstream
Tssr30383	transcription start site region 30383	1641 bp upstream
Tssr30384	transcription start site region 30384	1650 bp upstream
Tssr30385	transcription start site region 30385	1666 bp upstream
Tssr30386	transcription start site region 30386	1687 bp upstream
Tssr30387	transcription start site region 30387	1778 bp upstream
Tssr30388	transcription start site region 30388	1804 bp upstream
Tssr30389	transcription start site region 30389	1818 bp upstream
Tssr30390	transcription start site region 30390	1890 bp upstream
Tssr30391	transcription start site region 30391	1909 bp upstream
Tssr30392	transcription start site region 30392	1927 bp upstream
Tssr30393	transcription start site region 30393	1944 bp upstream
Tssr30394	transcription start site region 30394	1964 bp upstream
Tssr30395	transcription start site region 30395	1989 bp upstream
Tssr34352	transcription start site region 34352	450 bp downstream
Tssr34353	transcription start site region 34353	471 bp downstream
Tssr34354	transcription start site region 34354	481 bp downstream
Tssr34355	transcription start site region 34355	619 bp downstream
Tssr34356	transcription start site region 34356	1291 bp downstream
Tssr34357	transcription start site region 34357	1336 bp downstream
Tssr34358	transcription start site region 34358	1388 bp downstream
Tssr34359	transcription start site region 34359	1457 bp downstream
Tssr34360	transcription start site region 34360	1538 bp downstream
Tssr34361	transcription start site region 34361	1559 bp downstream
Tssr34362	transcription start site region 34362	1608 bp downstream
Tssr34363	transcription start site region 34363	1635 bp downstream
Tssr34364	transcription start site region 34364	1652 bp downstream
Tssr34365	transcription start site region 34365	1666 bp downstream
Tssr34366	transcription start site region 34366	1726 bp downstream
Tssr34367	transcription start site region 34367	1859 bp downstream
Tssr34368	transcription start site region 34368	1938 bp downstream
Tssr34369	transcription start site region 34369	1963 bp downstream
Tssr34370	transcription start site region 34370	1977 bp downstream