About   Help   FAQ
rs33036025 SNP Detail
Summary
  • ID
    rs33036025
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93350930 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCCTAGAAC TTCTGGATCG
CGACTGCAAC GGGCGTGTTG ATTTCAACGA ATTCCTCCTG TTCCTTTTCA AGATTGCTCA
AGCTTGCTAT TATGCTCTCG ATCAGGCCGC AGAGCTAGGC GAGAAGAGAG CCCTGCCCAA
TGAAAAGAGG AACCTGTCAC AAGATCGCAG GCAAGAAGAC CAAAGGAGAT TCGAGCCCCG
R
AGCAGACAAC TGGACGAAGA ACCTGGGCGC CGAAGCTGGC AGAAGAGACG TGAGCAGGAG
GAGCGCGCTG AGGAGCAGCG GCTGGAGCAG CGCTACAGGC AGCACCGCGA TGAAGAGCAG
AGACTGCAAA GGCGAGAACT GCAAGAACTG GAGGAACGCC TTGCAGAGAA AGAGCCGCTT
GGCTGGAGTA AGGGTCGTGA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46763320 NES10748461 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33036025 SNP A A A A A A G A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss46763320 NES10748461 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93350930 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 193 bp downstream
Tssr961 transcription start site region 961 380 bp upstream
Tssr962 transcription start site region 962 1500 bp upstream
Tssr963 transcription start site region 963 1537 bp upstream
Tssr964 transcription start site region 964 1633 bp upstream
Tssr30345 transcription start site region 30345 1234 bp downstream
Tssr30346 transcription start site region 30346 1209 bp downstream
Tssr30347 transcription start site region 30347 150 bp downstream
Tssr30348 transcription start site region 30348 130 bp downstream
Tssr30349 transcription start site region 30349 118 bp downstream
Tssr30350 transcription start site region 30350 74 bp downstream
Tssr30351 transcription start site region 30351 50 bp downstream
Tssr30352 transcription start site region 30352 within coordinates
Tssr30353 transcription start site region 30353 7 bp upstream
Tssr30354 transcription start site region 30354 25 bp upstream
Tssr30355 transcription start site region 30355 44 bp upstream
Tssr30356 transcription start site region 30356 57 bp upstream
Tssr30357 transcription start site region 30357 155 bp upstream
Tssr30358 transcription start site region 30358 270 bp upstream
Tssr30359 transcription start site region 30359 299 bp upstream
Tssr30360 transcription start site region 30360 329 bp upstream
Tssr30361 transcription start site region 30361 654 bp upstream
Tssr30362 transcription start site region 30362 668 bp upstream
Tssr30363 transcription start site region 30363 811 bp upstream
Tssr30364 transcription start site region 30364 882 bp upstream
Tssr30365 transcription start site region 30365 917 bp upstream
Tssr30366 transcription start site region 30366 969 bp upstream
Tssr30367 transcription start site region 30367 1013 bp upstream
Tssr30368 transcription start site region 30368 1030 bp upstream
Tssr30369 transcription start site region 30369 1043 bp upstream
Tssr30370 transcription start site region 30370 1050 bp upstream
Tssr30371 transcription start site region 30371 1070 bp upstream
Tssr30372 transcription start site region 30372 1083 bp upstream
Tssr30373 transcription start site region 30373 1134 bp upstream
Tssr30374 transcription start site region 30374 1152 bp upstream
Tssr30375 transcription start site region 30375 1165 bp upstream
Tssr30376 transcription start site region 30376 1191 bp upstream
Tssr30377 transcription start site region 30377 1213 bp upstream
Tssr30378 transcription start site region 30378 1246 bp upstream
Tssr30379 transcription start site region 30379 1264 bp upstream
Tssr30380 transcription start site region 30380 1344 bp upstream
Tssr30381 transcription start site region 30381 1362 bp upstream
Tssr30382 transcription start site region 30382 1421 bp upstream
Tssr30383 transcription start site region 30383 1432 bp upstream
Tssr30384 transcription start site region 30384 1441 bp upstream
Tssr30385 transcription start site region 30385 1457 bp upstream
Tssr30386 transcription start site region 30386 1478 bp upstream
Tssr30387 transcription start site region 30387 1569 bp upstream
Tssr30388 transcription start site region 30388 1595 bp upstream
Tssr30389 transcription start site region 30389 1609 bp upstream
Tssr30390 transcription start site region 30390 1681 bp upstream
Tssr30391 transcription start site region 30391 1700 bp upstream
Tssr30392 transcription start site region 30392 1718 bp upstream
Tssr30393 transcription start site region 30393 1735 bp upstream
Tssr30394 transcription start site region 30394 1755 bp upstream
Tssr30395 transcription start site region 30395 1780 bp upstream
Tssr30396 transcription start site region 30396 1829 bp upstream
Tssr30397 transcription start site region 30397 1846 bp upstream
Tssr30398 transcription start site region 30398 1921 bp upstream
Tssr30399 transcription start site region 30399 1968 bp upstream
Tssr34352 transcription start site region 34352 241 bp downstream
Tssr34353 transcription start site region 34353 262 bp downstream
Tssr34354 transcription start site region 34354 272 bp downstream
Tssr34355 transcription start site region 34355 410 bp downstream
Tssr34356 transcription start site region 34356 1082 bp downstream
Tssr34357 transcription start site region 34357 1127 bp downstream
Tssr34358 transcription start site region 34358 1179 bp downstream
Tssr34359 transcription start site region 34359 1248 bp downstream
Tssr34360 transcription start site region 34360 1329 bp downstream
Tssr34361 transcription start site region 34361 1350 bp downstream
Tssr34362 transcription start site region 34362 1399 bp downstream
Tssr34363 transcription start site region 34363 1426 bp downstream
Tssr34364 transcription start site region 34364 1443 bp downstream
Tssr34365 transcription start site region 34365 1457 bp downstream
Tssr34366 transcription start site region 34366 1517 bp downstream
Tssr34367 transcription start site region 34367 1650 bp downstream
Tssr34368 transcription start site region 34368 1729 bp downstream
Tssr34369 transcription start site region 34369 1754 bp downstream
Tssr34370 transcription start site region 34370 1768 bp downstream
Tssr34371 transcription start site region 34371 1822 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory