rs33036341 SNP Detail

Summary

• ID
  rs33036341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86400330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGATCAC AGCCTGAAAA GCCCATCGCC CTCACATGCT
  TCGAAACCCC GATCCCAGTA TGCACACACT ACTCACTTCA CTGATCGAAA AGTATTTGTC
  Y
  CTTGGATGTT TGTGGAGAGT CAGTCAACTT AACAGAACGG GATGGGAGCC AGGGCCCCCT
  TCACTGTACA GGGGCACTCC AAAGAACAAA GGCACAACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435717	NES12837483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
ss144878427	ENSMUSSNP864311	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33036341					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435717	NES12837483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86400330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	142 bp distal
Gm41907	predicted gene, 41907	within coordinates
Rpl30-ps6	ribosomal protein L30, pseudogene 6	1051 bp upstream
Rr371652	regulatory region 371652	within coordinates
Rr396149	regulatory region 396149	1809 bp downstream
Rr396150	regulatory region 396150	936 bp downstream
Rr414594	regulatory region 414594	1032 bp distal
Rr414595	regulatory region 414595	89 bp proximal
Tssr7756	transcription start site region 7756	1837 bp downstream
Tssr7757	transcription start site region 7757	919 bp upstream