rs33036343 SNP Detail

Summary

• ID
  rs33036343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86400241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCACCG CGGTGAGACC
  TCATTTCCTA GGGAGGCGGC CGCTGGGCGC CGCCTTCATC CAGGCCGGGC GGCCAGAGCT
  GCTGCCACGC CCGGGCTCCC AGGCTAAATT TAGCTCTTCT ATTCCGGTCT CTGCCCGGCC
  CTTGCCCTGG AGCCAACCGG TAGAAGTAGA AAGGAATGGA AGAGAGAAGC AGAGATCACA
  R
  CCTGAAAAGC CCATCGCCCT CACATGCTTC GAAACCCCGA TCCCAGTATG CACACACTAC
  TCACTTCACT GATCGAAAAG TATTTGTCCC TTGGATGTTT GTGGAGAGTC AGTCAACTTA
  ACAGAACGGG ATGGGAGCCA GGGCCCCCTT CACTGTACAG GGGCACTCCA AAGAACAAAG
  GCACAACGTG CTGGCATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435719	NES12837481	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33036343					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435719	NES12837481	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86400241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	53 bp distal
Gm41907	predicted gene, 41907	within coordinates
Rpl30-ps6	ribosomal protein L30, pseudogene 6	1140 bp upstream
Rr371652	regulatory region 371652	within coordinates
Rr396149	regulatory region 396149	1720 bp downstream
Rr396150	regulatory region 396150	847 bp downstream
Rr414594	regulatory region 414594	943 bp distal
Rr414595	regulatory region 414595	178 bp proximal
Tssr7756	transcription start site region 7756	1748 bp downstream
Tssr7757	transcription start site region 7757	1008 bp upstream