rs33036375 SNP Detail

Summary

• ID
  rs33036375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85617336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTTTTA TTGCCTACCT
  TCATGACCTC TCATGAATAA CACTACTACT GATTCAGCAT AAAATCTTAC AAGTGTTTAT
  AGGTTATATC ATGACCAGAA ATCGTCAAGT AAGATAATCT GTCAGAAATA GAGGTCTCTT
  TGGAAATTAG CTTCATGAGA AGTACCATTA ATTTCTAATT GAAAGATGCT TGCAATGACA
  R
  ATTTGTCCTG GTGAACAGGG CAAATTGATA AGATTATGAG TAGGAGAGGC CCCCTACTTC
  ACTAGAGAGC AAGAAGTAAC CTCCTCACAG AATTTCTCAT TTTAACACTT CATCAGATCG
  GATCTCTACA GTAAGACTTG TGGTGCAGAG AGTACTGTCT CCCACAGCAT TCATTGGAGA
  CTTCTCTCTC TCTCTCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49435249	NES12840918	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33036375					SNP	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435249	NES12840918	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85617336 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	1336 bp distal
Rr366934	regulatory region 366934	1958 bp downstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7686	transcription start site region 7686	1370 bp downstream