rs33036377 SNP Detail

Summary

• ID
  rs33036377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85615354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTGCCT CAGGGTCTTA
  GAATAAAGGT GGCTTATAAA TAGCAGGCAC TGTGGCATGT GACCGTGGTT CAAAAAGAAA
  ATCAGACTGG CTTAGCAGGA AGTGAGGGCA CAGTCTCCCA GCTACAGGAT GTTAGAAACC
  TGAAACCAAC CCCCACTTCC TGCTGTAGTC AGTTGTGAGC ACTTTGTATC GAGGACCAGG
  Y
  CCCGTGAGTT CAGATCCCAA GACCAGTGTA AAAAGCTGAA AACCATGGTG CACACTTGCA
  ACCCTAGGGA TGGGAGCAGA AACAGCAAGA TCCTGTGAGC TCACCAGCTA GTCAGTGCAA
  TTGCAAGCTC CAGGCTCAGC TGAGAGACCT TGTGGCATAA AGTAAATCAT ATGAAGAGCA
  AGAGAGGAGG ATACCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435253	NES12841055	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33036377					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435253	NES12841055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85615354 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	within coordinates
Rr366934	regulatory region 366934	within coordinates
Sp100	nuclear antigen Sp100	within coordinates
Tssr7686	transcription start site region 7686	607 bp upstream