rs33036864 SNP Detail

Summary

• ID
  rs33036864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84423716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAACTGG CTGAGGCTCC ACCTCTCTCT GCATAGCCAT
  CATCTCACCC TCACTCCCCC CACCTCCCCA CCCCCACCCA GGGTTTTTCT GAGTTGCCCT
  R
  GCTGTCCTAG AACTCTATAG ACCAGTCTGA CCTCAAACTC AGAGATCCCC CTGCCTCTGC
  CTCCCAAGTC CTGGAATCAA AGGTGTGCAC TACCACCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46226265	mCV23003514	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145360187	ENSMUSSNP700455	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss322745520	CHEV_8_86220986	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33036864					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84423716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20652	CpG island 20652			759 bp proximal
Cpgi20653	CpG island 20653			1139 bp proximal
Pkn1	protein kinase N1			Intron
				Noncoding-Transcript-Variant
Rr666288	regulatory region 666288			1315 bp distal
Rr666289	regulatory region 666289			177 bp proximal