rs33037575 SNP Detail

Summary

• ID
  rs33037575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85613194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATGGCC AGCTATAGTG
  GTCACTGTGG CAGTCACTGA TGTGGTCAGT TGTAATGCTC ACTGTGAGGC TCAGCCACAG
  TAGTCATTCT GTGAATGAGT GAGTGAATGA ATGAATGAAT GAATGAAGAC AGAAAAAAAG
  ACAACCATAA AAAAGAAGGA ACAGAGGCAA CAATTTTGTA TACTAAATAT CCAGAAATGA
  Y
  TAACAGAGAA ATAAAGGGGA ACAGTAAATC AGAGCACTGT GGACAAAAAG CAGCACAGGA
  GTTGGACAAC ATGAGAATGT CGTCGGGTTG GTGCAGAGGC AGAGCAACAG CCAGGAAGTG
  TAGCAGGATG AGGCATGGTC TGTTGGATGG GGGTATAGTT ACTAGGAAGC TATGTAATTT
  TTTCTCAGAT CATTTGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435265	NES12841129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33037575					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435265	NES12841129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85613194 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	808 bp proximal
Rr366934	regulatory region 366934	1999 bp upstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7685	transcription start site region 7685	369 bp downstream