rs33037581 SNP Detail

Summary

• ID
  rs33037581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85608800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTATGCCA GACCCATCAG
  TCCCTACATA TTGAATTCGT GGGATGATTT GCAGAGAGGA TTAAAGGACT CAGGATCTCC
  ATCCTGACAG AAAAGATCAT GAAAGCATCT TTATAGTCCA TACACTCTCT ACTATTTAGG
  TAGTCAGAGA ATTCCTATGA CCATTTTAGT TCTAGATTAC TGGTTTTATT TTCCCTTTTC
  R
  TCCCAGATAC TTCTGACACT GAGAGCTCTA TCATCATTAG AAGACGGAAA AGGACAGGAC
  GTAAGAACAA TTTAAAATTC TAGATGTAGC AATTACTTCT CTGTGTTACT AAAGCTCTAA
  ATCACTCTGA TTTTTAGATA CCCTTTAAAA AAATTAACCT GGTATTTTAG ATCATTTTGA
  TGATGCTTTT TGGGTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435273	NES12805618	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33037581					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435273	NES12805618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85608800 () rs orientation: forward

Symbol	Name	Function Class
Rr414376	regulatory region 414376	405 bp distal
Sp100	nuclear antigen Sp100	within coordinates
Tssr7681	transcription start site region 7681	within coordinates
Tssr7682	transcription start site region 7682	1210 bp upstream
Tssr7683	transcription start site region 7683	1309 bp upstream
Tssr7684	transcription start site region 7684	1329 bp upstream