rs33037583 SNP Detail

Summary

• ID
  rs33037583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85608762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTATAT TTGTTACATT
  TTACATTTGT ATTATTACAT CTATGCCAGA CCCATCAGTC CCTACATATT GAATTCGTGG
  GATGATTTGC AGAGAGGATT AAAGGACTCA GGATCTCCAT CCTGACAGAA AAGATCATGA
  AAGCATCTTT ATAGTCCATA CACTCTCTAC TATTTAGGTA GTCAGAGAAT TCCTATGACC
  R
  TTTTAGTTCT AGATTACTGG TTTTATTTTC CCTTTTCGTC CCAGATACTT CTGACACTGA
  GAGCTCTATC ATCATTAGAA GACGGAAAAG GACAGGACGT AAGAACAATT TAAAATTCTA
  GATGTAGCAA TTACTTCTCT GTGTTACTAA AGCTCTAAAT CACTCTGATT TTTAGATACC
  CTTTAAAAAA ATTAACCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435275	NES12805617	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33037583					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435275	NES12805617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85608762 () rs orientation: forward

Symbol	Name	Function Class
Rr414376	regulatory region 414376	367 bp distal
Sp100	nuclear antigen Sp100	within coordinates
Tssr7681	transcription start site region 7681	30 bp upstream
Tssr7682	transcription start site region 7682	1248 bp upstream
Tssr7683	transcription start site region 7683	1347 bp upstream
Tssr7684	transcription start site region 7684	1367 bp upstream