rs33037725 SNP Detail

Summary

• ID
  rs33037725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131402865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATGTGG GCTCACCCAC
  AATCTATTTC CAGAGATGGG TATCTATGGG GATCACACAC ACTGATCACA TCATACAGAT
  TGATGTTTGC TCAGATTTCC AAGGAACTAA AGCAAGACCG AGGTTTGTAA CATCTACAAA
  GGGTAAGAAA GAGTGAGAAG CCTGTTTAAG GGAAAACACA TTAGTATCAA GAACCCCTCG
  S
  GCGCGCTCTC TCTCTCTCTA GTAAGAGAAC AGGAAGTTGA TAAACTTCCA CAGTTAGGTT
  GTGGGTCATC TAAGCTTTCC AGGTAAGGAC CGCCCAGAGG GGAAGGGTCT AAAGTGAGGG
  AATCACTCAC CCAGAGGCAG GACGAAGAAA AAGGGGAACC AGCACAGGAC GAAGACACCC
  ACGACGATGG CTAGGGTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45229047	mCV22780900	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss147607874	ENSMUSSNP2101490	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33037725					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131402865 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	within coordinates
Cpgi12295	CpG island 12295	87 bp proximal
Gm14285	predicted gene 14285	831 bp upstream
Gm39938	predicted gene, 39938	1727 bp downstream
Rr55657	regulatory region 55657	within coordinates
Tssr20277	transcription start site region 20277	660 bp upstream
Tssr20278	transcription start site region 20278	693 bp upstream
Tssr26401	transcription start site region 26401	1543 bp downstream
Tssr26402	transcription start site region 26402	1570 bp downstream
Tssr26403	transcription start site region 26403	1810 bp downstream