rs33037831 SNP Detail

Summary

• ID
  rs33037831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCAGA CGTGAGCTAT
  GCAGTCCCTG TTGTCTAGGA GCCTGCGTCA TTCCCCAGAA CCATCTCCCC AGTCACGTGT
  TCCCTCATCG GACGGGAACT CACGGGACAC TTCAGAGGAC CTACTTGTCT CTTGAGTGGC
  GGCCTGGCTG AAGGCATTCC ATACACTCCT AGGAGCCTAC ATCACAGACC CAACTCCCTA
  R
  GAATCCAAAC GTAGAGGAAA ACAGAGGCCC AGGCTCACCC CAATGTGGCT TCCCTATTTC
  AGCATCTGTG GGTTCCATGG TTTTCTACTC TTAATGTAGT TTCTCTCCGT GTGTGTTTAA
  TAAGCACAGA ACCCTTCCCC ACCATGAACC CTTCTGGAAA TCCAAACAAC TGAAGCTTTT
  CAGTCCACCA ACAGATTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45729606	mCV22903045	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss321718361	CHEV_5_149365646	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33037831					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490880 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	209 bp upstream
Cpgi17076	CpG island 17076	923 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	145 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1419 bp distal
Rr625195	regulatory region 625195	791 bp distal
Rr625196	regulatory region 625196	1253 bp distal
Rr625197	regulatory region 625197	219 bp distal
Rr625198	regulatory region 625198	within coordinates
Rr625199	regulatory region 625199	124 bp proximal
Tssr49862	transcription start site region 49862	1677 bp downstream
Tssr54571	transcription start site region 54571	1947 bp upstream
Tssr54572	transcription start site region 54572	1849 bp upstream
Tssr54573	transcription start site region 54573	1797 bp upstream
Tssr54574	transcription start site region 54574	1642 bp upstream
Tssr54575	transcription start site region 54575	1553 bp upstream
Tssr54576	transcription start site region 54576	1382 bp upstream
Tssr54577	transcription start site region 54577	1227 bp upstream
Tssr54578	transcription start site region 54578	189 bp upstream
Tssr54579	transcription start site region 54579	45 bp upstream
Ubl3	ubiquitin-like 3	1281 bp upstream