rs33038227 SNP Detail

Summary

• ID
  rs33038227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189792085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCATGAA CGGGAACTCT
  TTTGCATAAG GGCTCTCATA CAGCCAAAAA AAAAAAAAAA AAAAATCAAA CAAACAAACA
  ACAAAAAAAG CAGGATGGTC AGCTAAAATT TCATGTCAGA CAAGCAACGG GTAATGTTAG
  AACATCAAGT ATATCGCCCT GGGGTACAGA GGTGGCTCAT TGAGGACCTG AGTGAAAAGC
  Y
  AAGTGTGCTG GCTCATGCCC ATTGTCTCAG CACCAGAGAA ATGGAAATGG GGGGATGGTG
  TTACTGAGCT TGCTGGCCGG CTAGTTTAGA AAACCCAGCA AGCTCCAGGT TAACTAACTG
  AGAGACCCTG CCTCAAAATA TAGTGTGGAG GGTGATTGAG GAAGACATCT GCCACTAATC
  TCTTACCTCT ACATGTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763961	NES10649356	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33038227					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763961	NES10649356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189792085 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21243	regulatory region 21243	1285 bp distal
Rr21244	regulatory region 21244	316 bp proximal
Rr32812	regulatory region 32812	within coordinates
Rr32813	regulatory region 32813	717 bp proximal
Rr407118	regulatory region 407118	1402 bp proximal
Tssr10700	transcription start site region 10700	563 bp downstream