rs33038405 SNP Detail

Summary

• ID
  rs33038405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85608637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGGTCT GCAAGGATCC
  CGCTTAACCA CACCGAGAAG CAGCCATGTC CTATTTTTTT TTCCATTCAA AATTATTATG
  AATTGGGGCT TGGTGGAATA ATTGTAGTTG AAAGGCAGTG TTCTTTTTAT TATATTTGTT
  ACATTTTACA TTTGTATTAT TACATCTATG CCAGACCCAT CAGTCCCTAC ATATTGAATT
  Y
  GTGGGATGAT TTGCAGAGAG GATTAAAGGA CTCAGGATCT CCATCCTGAC AGAAAAGATC
  ATGAAAGCAT CTTTATAGTC CATACACTCT CTACTATTTA GGTAGTCAGA GAATTCCTAT
  GACCATTTTA GTTCTAGATT ACTGGTTTTA TTTTCCCTTT TCGTCCCAGA TACTTCTGAC
  ACTGAGAGCT CTATCATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435277	NES12805615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33038405					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435277	NES12805615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85608637 () rs orientation: forward

Symbol	Name	Function Class
Rr414376	regulatory region 414376	242 bp distal
Sp100	nuclear antigen Sp100	within coordinates
Tssr7681	transcription start site region 7681	155 bp upstream
Tssr7682	transcription start site region 7682	1373 bp upstream
Tssr7683	transcription start site region 7683	1472 bp upstream
Tssr7684	transcription start site region 7684	1492 bp upstream