rs33038574 SNP Detail

Summary

• ID
  rs33038574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189772302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAACATG GAGGCCTTAT
  ATGATGGAAG ATGTGGCTAC TCTGGGCAAG AGTATCCTGT CACAGTGTTC TTTGTTCAAG
  AGAGCACAAT TAGGGATTTG GGAAGAAATC TCAAGTCCGA GGTTTCCAGC GGACAGTGTA
  CATTAACTTA AGTCACAGAA TTATAGTGGT CGGTATATGG AAAAACTTGG CCGAAAGAAA
  R
  CAGCTTCTGT TCCCATCAGC ACCGTCATCA CCACCACCAT CACCACCACC GCTGTCATCA
  CCATCCCCTT CTCTACCACC ATCACCGTCA CCACCACCAT CACTACTGTA CTGCCCCCTC
  TGCTGTCACC AACACCGCCC CGCCCCCACT TTTGTCATCT CTAAGAAACC CGTGAAGATG
  GGTTGATTAT TGTTGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
ss46763766	NES10650310	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NZW/LacJ	PWD/PhJ
rs33038574					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763766	NES10650310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189772302 () rs orientation: forward

Symbol	Name	Function Class
Gm39736	predicted gene, 39736	within coordinates
Rr425901	regulatory region 425901	1391 bp proximal
Rr425902	regulatory region 425902	1919 bp proximal