rs33038579 SNP Detail

Summary

• ID
  rs33038579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189772983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTTTT TAAAAAAAAC
  AAAACAGACT CTCATGTGGC CTAGGCTAGC TTTGAACTTA GAAAGTAGCT ATAGATAGCC
  TTGAACTTCT GATCCTCTTG CCTCTACCTC TTGTTAAGAT TACAGGCATT TGCCTAGTTC
  ATGTGTCAGT GGGCATGGAG CCCAGAGATT CATGTGTGAT GTACAAGTGG TGTAACAAGT
  R
  ATCCTCGACC CCAGTGCTAG GCCATAAGTT CAAAGGGCTT AAATCAGTGC TGACGACTGT
  GTCCGAGTCA TTGCTTCTGT TTGACATTTG CTAATGATTC CAGAGAAGAT TTAGTTGGTG
  GCAATTTCAG AATTTCAGCC TTCTTTACAC ACACACACAC ACACACACAC ACACACACAC
  ACAAAGAGAG AGAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss46763772	NES10650312	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs33038579					SNP	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763772	NES10650312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189772983 () rs orientation: forward

Symbol	Name	Function Class
Gm39736	predicted gene, 39736	within coordinates
Rr425901	regulatory region 425901	710 bp proximal
Rr425902	regulatory region 425902	1238 bp proximal
Rr425903	regulatory region 425903	1716 bp proximal