rs33038581 SNP Detail

Summary

• ID
  rs33038581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189773345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CAAAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAATGTAA
  TCACAGAACT TCTATTTACT GATCTGGATA ATTTAAATGT TTTAAAAATC AGAGTTAAAG
  AGTGCTGTCT AACAGCTTAG CAAAACCAAT TCATACGAGG AAAGTTTATT GAAGCAACAC
  R
  TTGTATAAAT AGCCAGAGCT GCTGTAGACG GTGGGTACTG GCTACTAAGA CTACCTATGT
  CATGAATCTC ACTTGGCAAG AGAACAGGCT CCCTTATCTG TGGTTTTGTT TTCTACAATT
  TCAGATACAT GTGGTCAAAA GCAATCCAAA ACCACTAAAT GAAAAATTCC AGATGCAGAC
  GTTCTCAATT CAGCATTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss46763775	NES10650313	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs33038581					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763775	NES10650313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189773345 () rs orientation: forward

Symbol	Name	Function Class
Gm39736	predicted gene, 39736	within coordinates
Rr425901	regulatory region 425901	348 bp proximal
Rr425902	regulatory region 425902	876 bp proximal
Rr425903	regulatory region 425903	1354 bp proximal