rs33039308 SNP Detail

Summary

• ID
  rs33039308
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84469177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG CCAAACCCAA GGCTTTGTGT
  W
  TGCTGGACAA GCACTCTACC AAGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46227124	mCV23004501	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss145361201	ENSMUSSNP1278509	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322745690	CHEV_8_86266447	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33039308					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84469177 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	1365 bp upstream
Cpgi20655	CpG island 20655	858 bp distal
Gm46046	predicted gene, 46046	within coordinates
Tssr2620	transcription start site region 2620	1251 bp downstream
Tssr2621	transcription start site region 2621	7 bp upstream
Tssr78294	transcription start site region 78294	1974 bp downstream
Tssr78295	transcription start site region 78295	1928 bp downstream
Tssr78296	transcription start site region 78296	1909 bp downstream
Tssr78297	transcription start site region 78297	1114 bp downstream
Tssr82052	transcription start site region 82052	1358 bp upstream