rs33039444 SNP Detail

Summary

• ID
  rs33039444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189773647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTGTTT TCTACAATTT
  CAGATACATG TGGTCAAAAG CAATCCAAAA CCACTAAATG AAAAATTCCA GATGCAGACG
  TTCTCAATTC AGCATTGCTC TGAGTCAGGA GATGAAGTCT CTTGTTCCTC TTTGTTGGCT
  GAGACATGAA CCAGCCTCTG CCCAGCGTTT CCTCACAGTA TGTTCTACCC TCCTGTTCAA
  W
  GCTAGGTAGC CCTGTCTTAG TACTTAAATG GACTGCCATA GTGCTATAGC GCCCTCTTCA
  GGTTACCATG GCCACAGGGC TGCTGGGAAT TCCCACACGC TTAGATGAAG CTGCAGTGTG
  CTTCAAAAGC TGAGTATGTC TGACTTAGGA GGAGGAGGGG GAGGAGGAGG AGGAGGAGGA
  GGAGGAGGAG GAGGAGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46763778	NES10650315	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33039444					SNP	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763778	NES10650315	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189773647 () rs orientation: forward

Symbol	Name	Function Class
Gm39736	predicted gene, 39736	within coordinates
Rr425901	regulatory region 425901	46 bp proximal
Rr425902	regulatory region 425902	574 bp proximal
Rr425903	regulatory region 425903	1052 bp proximal