rs33039447 SNP Detail

Summary

• ID
  rs33039447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189775332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCCGT GCCCAGGGCT
  GGCATGGCAT GGCAGGGACA TACCATTGTG TTTATCTGGG TTCTGGGATC TGCACTCAGG
  TCCTGCTGCT TGCACAGCAA GCGCTTTACC CCCTAACCTA TCTCCCAGGC CACCCCACCG
  GAGTCTCAGT AAAAGGAGTC ACGGAAGCCA AGAGCTTAGA GCTGTACACT GCCTGTAGCC
  R
  GCCCAGGAGA TGCTATTGTT TTTCTGTCCT TGATACCAAC TGCAGCCACT CAAAAGAAAT
  GGCTGTGCGG TGGGCACCCT GTTAGGCATA ATTTTATCTT CATAGAAACT CTCTGTGCTA
  CCGACTTTTC GTCCCCAGGC ATAGATGAAG AAAGTGAGGC ATGGGGACCA TTTGCCATCC
  GCTCAAGGTT ACATATTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss46763781	NES10650009	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs33039447					SNP	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763781	NES10650009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189775332 () rs orientation: forward

Symbol	Name	Function Class
Gm39736	predicted gene, 39736	within coordinates
Rr425901	regulatory region 425901	1618 bp distal
Rr425902	regulatory region 425902	634 bp distal
Rr425903	regulatory region 425903	396 bp distal