rs33039541 SNP Detail

Summary

• ID
  rs33039541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3332377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGGAA TTTCTGGGAG
  TCAACTGTGC CACAGGTGCT GGTAAAAAGC TGCCCAACAT TTGGAGATGT TGATGTGAGG
  CAGGTGGCAT CTCCAGACTG CACGGCCTTT GGAGATGGTG TTGCACTCAC TCCCAGTAAG
  AGCTGCAATC TTGATTCTGT CAGTGCTGCC CACTGCTACA GACACTGGCT ATAGCTGCTT
  Y
  CATAATAACT GCTTCCATCA ATCCCCATGA GCTGCATGCT CCTCACAAGC TAAGAGATTC
  AAGAACAGGT CGTCCAAATC TATCGAGGTG ACCAGCAGCT GGTAGCTAGC TTTGAGTAAA
  ATGACCAGGA AGCAAGGGAC AAATGGTCCC ACCACAACGC TTGCCAAACT GCAAGTCAGC
  TACTGTCCCT GCCTAGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45229611	mCV27554301	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146261288	ENSMUSSNP5599406	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33039541					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3332377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11150	CpG island 11150			839 bp proximal
Rpp38	ribonuclease P/MRP 38 subunit			Intron
				mRNA-UTR
Rr396749	regulatory region 396749			1195 bp upstream
Rr550889	regulatory region 550889			within coordinates
Rr550890	regulatory region 550890			1293 bp proximal
Tssr15888	transcription start site region 15888			1818 bp upstream
Tssr22355	transcription start site region 22355			1083 bp downstream
Tssr22356	transcription start site region 22356			1107 bp downstream
Tssr22357	transcription start site region 22357			1226 bp downstream