rs33039863 SNP Detail

Summary

• ID
  rs33039863
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85602856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGGTGTG GTTAGTACTT
  GGATGGGAGA CCACCTGGGA TTATCAGGTG CTGTAGGCTT AGTTTGTCTT GGCTGGGAGG
  GAGCACCTCT GTGCAGAGGA GATGCATGCC AGTGACTGAG AAGGAGCATC TCTGTGCCAG
  TGGTGGGCTC ACAGCCTTGA GTTAACTGTT TGGGCCTTCC TAGTCCTCAC ACTCAGGTGT
  S
  CCCTGCTGTG TGGGTCTGCT ATCACCCCTA AGATGCTTAA GAGACTTTCC TTTGTGCAGA
  ACTCAGCAGT GGGGATTCTG ATAATGGAGA GAACTTCTCA GAAGCTACAA CCACAGTCCC
  CTCCCAGCCA GGTAAGGAGA CCCAGGTAAC AAGGCAAGCT GTGGATATTT GAGTCACAAG
  CTACTGTGTT ATGATGGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49435305	NES12805915	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33039863					SNP	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49435305	NES12805915	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85602856 () rs orientation: forward

Symbol	Name	Function Class
Gm55351	predicted gene, 55351	150 bp downstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7680	transcription start site region 7680	1412 bp downstream