rs33039876 SNP Detail

Summary

• ID
  rs33039876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189793055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GCTGACCCAC CAAGCATGTG
  Y
  TAGGAGGTAA TGGGCCCTGG TGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46763982	NES10649372	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	T		T		T	T	C	C		T
ss146494738	ENSMUSSNP1110373	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss320192082	CHEV_1_191884737	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33039876					SNP	T	C	T	C	C	T	C	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763982	NES10649372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189793055 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21244	regulatory region 21244	455 bp distal
Rr32812	regulatory region 32812	855 bp distal
Rr32813	regulatory region 32813	within coordinates
Rr407118	regulatory region 407118	432 bp proximal
Tssr10700	transcription start site region 10700	1533 bp downstream