rs33039879 SNP Detail

Summary

• ID
  rs33039879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189793123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGACTT GCAGATATTG
  ACCCCAGAAG GTCCACTGGG GATCCACTGG GGACTTTTCA CACGTGACCC TCCCCTTCAT
  CGTCATCATC ATTGCAATGG TTCGAATGAG TGGCTGACCC ACCAAGCATG TGTTAGGAGG
  TAATGGGCCC TGGTGTTCTG CATCCTTAAA TAAATTCACA GTGCTATGAG TGTGGCTATC
  Y
  CAAGAGTGGA TTTACTATTT TGCTCTATCC TGCTCAGAGT GCTTACCTTT CTGCCTTCCA
  CAATGGAATG AAGAAGTACC CTGGCCCTTG CCAGATACCT GCCCATGCTT TTGGACTTGC
  CACCCCACTG AACCACAGGG CAAGTATATC TCTATTATTT ATGGATTACC CAGCCTTGGG
  TACTCTGTCA ACAGAAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763985	NES10649374	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33039879					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763985	NES10649374	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189793123 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21244	regulatory region 21244	523 bp distal
Rr32812	regulatory region 32812	923 bp distal
Rr32813	regulatory region 32813	within coordinates
Rr407118	regulatory region 407118	364 bp proximal
Tssr10700	transcription start site region 10700	1601 bp downstream