rs33039934 SNP Detail

Summary

• ID
  rs33039934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT CATTTGCCTA GGTTGTTACC
  Y
  ATGCAGAGGC CTCTAATAAA ACCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45229802	mCV23687256	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss320579288	CHEV_2_156245772	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33039934					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	319 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	873 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1328 bp downstream
Tssr21156	transcription start site region 21156	684 bp upstream
Tssr21157	transcription start site region 21157	801 bp upstream
Tssr21158	transcription start site region 21158	1002 bp upstream
Tssr21159	transcription start site region 21159	1016 bp upstream
Tssr21160	transcription start site region 21160	1039 bp upstream
Tssr21161	transcription start site region 21161	1047 bp upstream
Tssr21162	transcription start site region 21162	1080 bp upstream
Tssr21163	transcription start site region 21163	1093 bp upstream
Tssr21164	transcription start site region 21164	1126 bp upstream