rs33040144 SNP Detail

Summary

• ID
  rs33040144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116726556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA TTGCAGAGTT TTACCCGGCT
  Y
  GGTCCTCAGT GCTGGCTGAG ATGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45730296	mCV24902857	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss51804059	NES14719106	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	T	T	C	T	T	T	C
ss149138993	ENSMUSSNP4556958	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33040144					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804059	NES14719106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116726556 () rs orientation: forward

Symbol	Name	Function Class
Rr618510	regulatory region 618510	302 bp proximal
Rr618511	regulatory region 618511	1362 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron