rs33040438 SNP Detail

Summary

• ID
  rs33040438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181239840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGACAGGC AAGCCTTCTA AATACCATAC AGGACCAGGG
  TGTGCACATT TCTTTGTCTT TAATAGTGTC TAACTATGAC TCACTGACAA AAAGTTTGAA
  Y
  GATGGGAAAG CTGACAAGAA GCACTTGCCA GGCACATGCC AGATTTCTTT TCTATGTGGC
  TTCTGCAGGG CCTACCCCAG GACAACAAGT GTGAATAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45229619	mCV23780809	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148402401	ENSMUSSNP1490870	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320632837	CHEV_2_181332752	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33040438					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181239840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12932	CpG island 12932	480 bp proximal
Rr573053	regulatory region 573053	548 bp distal
Rr573054	regulatory region 573054	38 bp proximal
Rr573055	regulatory region 573055	1155 bp proximal
Samd10	sterile alpha motif domain containing 10	Intron
Tssr28219	transcription start site region 28219	438 bp upstream
Tssr28220	transcription start site region 28220	913 bp downstream
Tssr28221	transcription start site region 28221	984 bp downstream
Tssr28222	transcription start site region 28222	1081 bp downstream
Tssr28223	transcription start site region 28223	1196 bp downstream
Tssr28224	transcription start site region 28224	1219 bp downstream